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147 Cards in this Set

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What are the Human uses of fungi?
Food, Alcohol, Citric Acid, Penicillin, Industrial processing, Agriculture, Hallucinogens.
What are the defining characteristics of fungi?
Hyphae, spores, Thallus, sporocarp, Cell Walls
What distinguishes fungi from other eukaryotes?
Get nutrients by Absorption, and reproduce by Spores.
What groups of organisms have been included in fungi, broadly defined?
Chromista including (Oomycota), and Protists
How has fungal evolutionary relationships been inferred?
Morphology, Biochemistry, Spore reproduction, Absorptive, Heterotrophic nutrition.
How many fungus species are known? What is the distribution?
97330 in Dictionary… 65k Asco… 31k Basidio… 1k Zygo… 700 Chytrid… 100 Blastocladio and Glomero
How many species are estimated to exist?
1.5 Million… 712k minimum (Mueller 2006)
Is there a fungus species named for homer simpson? Dracula?
Yes, Valsonectria simpsonii… Vladracula annuliformis…
How are oomycota different? (Anamorph, teleomorph, holomorph. Fossile Record.)
One tinsel and one whip flagella… Mostly diploid life cycle… Cellulose B-glucan walls… Mycolaminarins vs glycogen… Tubular cristae… Golgi with multiple Cisternae… Lysine synthesis and DAP pathway like plants.
How old are fossil fungi?
460Mya is oldest fossil… (Ordovician 455Mya glomeromycetes),,, (Silurian 420Mya ascomycetes)
What are key dates of fungal divergence? (Lineages)
630 Mya for zygomycetes and chytrids… 600 Mya for Glomero… 500Mya Asco / Basidio… 320Mya for Everything else
What do fungi need for growth?
Everything plants need + Carbon source
What is the composition of fungal cell walls?
Chitin (1-4 n-acetyal glucosamine) and B-glucans (Beta 1-3 or 1-4 glucose or cellulose polymers)
What are exoenzymes?
Secreted enzymes that break down substrate so fungi can absorb it?
What are the enzymes of the cellulase complex? What do they do?
cellobiohydrolase… glucanohydrolase + endoglucanase… cellobiase
What enzymes degrade lignin, and what do they do? (mechanism)
(White rot fungi)… Phenol-oxidases… Oxidative attack makes free radicals… (Manganese peroxidase, Glyoxal oxidase, Laccase)
Examples of root decay pathogens? What is the difference between, white, brown, and soft rot fungi?
Armillaria, Heterobasidion, Phellinus….. white (cellulases and lignases)… brown (cellulases only)
What does the spitzenkorper do?
Associated with growing hyphal tips.
What does the cytoskeleton do?
Microvesicles transporting chitin synthases to growing cell wall.
What is a dolipore septum?
The septal pore has a cap or parenthosomes. (complex and unique to basidiomycota)
What is a parenthosome?
A organelle that is associated with basidiomycota dolipore septa. (Septal pore cap)
How are basidiomycetes different from other groups?
Septate Mycelium, clamp connections, complex dolipore septa, dikaryotic haploid mycelium, sexual spores on basidium, complex sporocarps.
What are the 3 classes of basidiomycota?
Agaricomycotina (Homobasidiomycetes)… Ustilaginomycotina (Ustilaginomycetes)… Pucciniomycotina (Urediniomycetes)
How are hymenomycetes and Hymenomycetes different?
they arent.. At least I don’t think. =/
How are hymenomycetes are gasteromycetes different?
Hymenomycetes have a holobasidia and hymenium that remains intact during sporulation and is exposed (gills, pores, discharge ballistospores etc.) … Gasteromycetes don’t have showing hymenium at basidiospore release (closed basidiospores with passive discharge)
What is Holobasidium, and it's taxonomic significance? What is the other form called?
Basidium not divided by septa. (i.e. all sterigmata merge into same cell body) … Opposed to Phragmos-basidium
What is phragmosbasidium and it's taxonomic significance? What is the other form called?
Basidium divided by one or more septa. (i.e. spores or sterigmata each lead to a different cell)… opposed to Holobasidium.
Is the septal pore structure of basidiomycota phylogenetically informative?
Yes… If you see spores not separated by septa they are holobasidium in the Agaricomycetes subphyla … However having septa doesn’t disqualify something from being an Agaricomycete.
What is a hymenium?
Tissue layer that contains the reproductive cells (basidia), and supporting sterile cells.
What is a hymenophore?
A basidiocarp with a Hymenium
What is a monokaryon? (also homokaryon)
All nuclei are identical, there may be multiple nuclei per hyphal compartment tho.
What is a dikaryon (heterokaryon)?
(Asco / Basidio) 2 Different compatible haploid nuclear types pair and divine synchronously.
What do mating type genes (loci) control?
Compatability at A only results in Barrage…. If B is compatable then reaction is Flat.
Distinguish between unifactorial (dipolar) and bifactorial (tetrapolar) mating.
Unifactorial has only 1 mating locus and requires 2 unique alleles for mating… Bifactorial has 2 unlinked mating loci on different chromosomes and requires 4 different alleles for mating compatability. (75% are bifactorial)
Distinguish homothallic, heterothallic, and secondary heterothallic.
25% Homo can self fertalize, 75% hetero is obligate outcrossing, 2nd-ary Basidiospores are binucleate (one nucleus of each mating type) and germinating spores are already dikaryotic.
What are mating type loci, what do they control?
Mating comptability. (A = nuclear pairing, Initiation of clamp, Separation of Clamp) (B = Septal breakdown, Nuclear Migration)
What is a clamp connection? What does it indicate? What problem it solve?
Direction of growth, and 2 different nuclei per cell. Distal cell go backwards to merge with proximal cell.
What is somatic vs mating incompatibility?
Mating incompatibility is in monokaryons… Somatic incompatability functions in dikaryophase.
What problem does somatic incompatibility solve?
Incompatible reactions result in cell death to prevent mixing of genetic material.
What did Buller do for amusement?
Wrote poems about science.
What are the 5 Fungal Phyla?
Zygo, Glomero, Chytridio, Basidio, Asco.
What are the 3 types of meiosis?
Intranuclear, centric, noncentric.
Characteristics of Asco and Basidiomycota?
Septate, and Complex Sporocarps.
Characteristics of Glomeromycota?
Aseptate, Lack meiosis?
Characteristica and Subphyla of Zygomycota?
Aseptate normally, Zygosporangium, (Dimargaritales, Entomophthorales, Mucorales, Zoopagales, Endogonales, Trichomycetes, Harpellales, Kickxellales)
Characteristics and subphyla of Chytridiomycota?
Aseptate hyphae, zoospore (chytridales, Monoblepharidales, Spizellomycetales, Neocallimastigales)
Blastocladiomycota,,, characters and what 1 order?
Blastocladiales
Fungi, vs fungi… wtf?
Fungi is a monophyletic Kingdom… fungi is a polyphyletic group including Chromista (Stramenopila) and Protists (Protoctists)
Function of Cellobiohydrolase and Exoglucanase?
Cleaves END of cellulose polymer.
Function of glucanohydrolase and endoglucanase?
Cleave internal bonds of cellulose
Function of cellobiase?
Hydrolyses cellobiose to glucose monomers.
What cleaves cellobiose units from ENDS of cellulose polymer?
Cellobiohydrolase… EXOglucanase
What cuts internal bonds of amophous cellulose?
Cellobiohydrolase and ENDOglucanase.
What hydrolyses cellobiose to glucose monomers?
Cellobiase
What is Laminated Root rot? Examples? Location? Function?
White rot, Phellinus weirii… Waldo Lake…Douglas fir laminated root rot west of cascades… Western redcedar butt rot in Idaho… Stays alive thousands of years in roots after forest fires.
How is Basidiomycota (phylum) specifically characterised?
Having Meiospores called basidiospores that are formed on specialized cells, basidia (the site of meiosis)
What things (not groups) falls into the Agaricomycotina category?
Muchrooms, Polypores, Jelly Fungi, Corals, Chanterelles, Crusts, Puffballs, Stinkhorns.
What things (not groups) falls into the Ustilaginomycotina category?
Smuts, Exobasidium, Malessezia
What things (not groups) falls into the Pucciniomycotina category?
Rusts, Septobasidium (insect parasites).
What is a Crucibulum?
Cup-Shamed, dull white peridioles, funiculus.
What is a peridiole?
A spherical spore that is ejected from cup shaped basidia.
What makes the Sphaerobolus speicies unique?
It's a cup shaped Cannon-ball fungus with one peridiole that is launched when the osmolarity of the endoperidium causes it to invert and project the peridiole out.
What is unique about the Lycoperdon group?
They passively discharge spores when water hits them on their continuous. peridium.
What are the 3 types of Mycelium?
Primary (monokaryon)… Secondary (dikaryon) with clamp connections … Tertiary, organized specialized tussues that make up the basidiocarp.
What is Monokaryon fusion Anastomosis?
Fusion of branches of the same or different hyphae?
Most basidiomycetes are what thallic? How is it distributed?
Most heterothallic… 25% of heterothallic are unifactorial… 75% are Bifactorial. With A and B loci.
What is Homothallic?
Dikaryon formation occurs in single, self-compatible thallus. (25% of basidiomycetes)
What is Heterothallic?
Requires 2 different unique compatible thalli… 75% of all basidiomycetes.
What is Secondary Homothallic?
Basidiospores are Bi-Nucleate… One nucleus of each mating type… Germinating spores are already dikaryotic.
What is the MAT locus and genes?
MAT locus consists of a few to several tightly linked genes (2+)
What describes unifactorial (bipolar) MAT genes?
One locus or factor (A).. Requires 2 unlike alleles for mating compatability (25% of heterothallic species)
What describes Bifactorial (tetrapolar) MAT genes?
Two UNLINKED loci on different chromosomes (A and B)… Requires 4 alleles for mating (75% of heterothallic species)
What is unique about Hymenomycetes mating?
They can have tons of different mating alleles per loci.. (A is locus,,, with alleles 1, 2, 3, 4 etc)
Giving mating examples (Loci+allele) for Unifactorial Bipolar monokaryon.
A1 x A2 (karyogamy) ---> A1A2 (meiosis) ---> A1 + A2 (spores)
Giving mating examples (Loci+allele) for Bifactorial Tetrapolar monokaryon.
A1B1 x A2B2 (karyogamy) ---> A1B1A2B2 (meiosis & reassortment) ---> A1B1, A2B2, A1B2, A2B1 possibilities.
A1B1 x A1B2 (same A allele) causes what observation?
NO clamps… Flat
A1B1 x A2B1 (same B allele) causes what observation?
YES clamps,,, BUT no nuclei migration… Barrage
What does the A locus control?
Nuclear pairing… Clamp Initiation… Clamp Separation…
What is A (alpha) and A (beta) … 32 and 9 in Schizophyllum commune
Closely linked subloci with multiple alleles. A different at either alpha OR beta results in successful mating compatability.
What does the B locus control?
Septal Breakdown… Nuclear Migration… Pheromone and receptor recognition…
What is B (alpha) and B (beta) … 9 and 9 in Schizophyllum commune
Closely linked subloci with multiple alleles. A different at either alpha OR beta results in successful mating compatability.
What is an example of secondary homothallic species? Why?
Agaricus bisporus (supermarket mushroom)… Spore contains 2 haploid nuclei with compatible mating type alleles… (spore has A1 AND A2 already)… Spore then germinated directly into a dikaryon.
basidiomycetes vs Basidiomycota?
Basidiomycota is the phylum characterized by having meiospores called basidiospores that are formed on a basidium… basidiomycetes is a common name for the phylum but is not taxonomic.
What groups or species fall into the Agaricomycotina category?
Agaricales, Boletales, Russulales, Cantharellales (mushrooms) … Gomphales, Phallales (coral, club, stinkhorn) … Hymenochaetales, Polyporales (polypores) … Auriculariales, Dacrymycetales Tremellales (Jelli Fungi) … Geastrales (earth star)
What groups or species fall into the Ustilaginomycotina category?
Ustilaginomycetes (smuts and plant pathogents) … Exobasidiomycetes ---> Exobasidium (plant pathogens) … Malessezia (mammalian skin yeast)
What groups or species fall into the Pucciniomycotina category?
Pucciniomycetes, Pucciniales/ Uredinales (rusts and pathogens) … Septobasidiales (crusts and insect parasites) … Microbotryomycetes (Plant pathogens)
Describe the septa of the subphyla of the Basidiomycota.
Agarico have a dolipore septum… Ustilaginio have a smut or "simple" dolipore septum with no cap… Puccinio have a simple septum with no cap but occlusions to the pore.
What subphyla of Basidiomycota have and do not have teliospores?
Agaricomycotina does not have teliospores… Ustilaginiomycotina and Pucciniomycotina do.
How is the Agaricomycotina broken down and how are their pores different?
Both have dolipore septa… Hymenobasidiomycetidae have a perforated OR nonperforated cap while Tremellomycetidae have nonperforated OR no cap.
What are Basidioles, Cystidia and Hyphidia?
Basidioles resemble basidia but have not produced spores … Cystidia are larger and unique but not understood… Hyphidia have a modified terminal hyphae.
What basidia groups do not have septa (homobasidiomycetes)?
Agaricales, Boletales, Cantharellales, Phallales, Polyporales, Russulales, Thelephorales.
What basidia groups have septa?
Augiculariales, Ceratobasidiales, Dacrymecetales, Filobasidiales, Tremellales, Tulasnellales.
What defines Aphyllophorales, and what 4 groups are part of it?
Non-gilled hymenomycetes … Thelephoraceae, Clavariaceae, Hydnaceae, and Polyporaceae.
Describe the family (Basidiomycota / Holobasidiomycetes / Hymenomycetes) ---> Dacrymycetales
Tuning fork basidia (aseptate) with 2 long sterigmata. Basidiospores become septate (2-3 lobes)… Causes brownrot and most specieis are orange or yellow.
Describe Auriculariales
Looks like ear that grows on a log.
Describe Agaricaceae
Gills Pink then brown in age… Brown spores.. Distinct Annulus… Free gills… Saprotrophs
Describe Amanitacea
(Toadstool) red top with nubs… Free gills… Annulus.. Example Aminita muscaria.
Describe Russulaceae
Brown top… White Print… Stem breaks like chalk… Examples (Lactarius or Russula)
Describe Coprinaceae
Coprinus (Inky Caps)… Grow in clumps… Liquify quickly… Saprotrophs
Describe Hygrophoraceae
Bright colored (orange)… Waxy gills… White Print… Mycorrhizal and saprotrophic spp
Describe Tricholomataceae
Diverse group of white spored muchrooms… Includes Armillaria, Clitocybe, Lentinus, Mycena, Marasmius, Pleurotus, Tricholoma.
Describe Boletaceae
Hymenium is sponglike with tubes or pores… Sometimes Truffles… Examples of Suillus (slimy), Boletus (dry), and Leccinum.
Describe Hymenochaetaceae
No clamps… Brown to Redbrown… Grows on wood (conks)… Examples of Phellinus, Inonotus, Coltrichia, and Hymenochaete.
Describe Ganodermataceae
Conks growing on wood and shelped shaped… Perennial… With clamps… Ganoderma specieis.
Describe Polyporaceae
Poroid hymenium… Grows on wood… Includes Fomes, Fomitopsis, Laetiporus, Polyporus, Trametes, Gleophyllum.
What are the 3 types of Hyphae?
Generative hyphae, (Vegetative Hyphae), Skeletal hyphae, and Binding Hyphae.
Describe Cantharellaceae
Terrestrial / mycorrhizal… Annual… White Print,,, funnel shaped basidiocarp… Example Cantharellus Craterellus.
Describe Gomphaceae
Terrestrial / mycorrhizal… Annual… Ochre Print,,, funnel shaped and wrinkles warted basidiocarp… Example Gomphus
Describe Clavariaceae
Coral including Clavaria, Ramaria, Thyphula… Annual
Describe Corticiaceae
Conks growing on dead wood… Mostly resupinate or reflexed… Corticium, Peniophora, Stereum.
Describe Hydnaceae
large Basidiocarps with toothed hymenium. Big brown cap like Sarcondon… Also Hydnum, and Hydnellum.
Describe Hericiaceae
White… Looks like parsley… Grows on wood… Toothed hymenium… Amyloid spores… Example Hericium
How common are mycorrhizal connections in plants?
85% of terrestrial plants are mycorrhizal.
What are Ectotrophic Ectomycorrhizae? Vs endo
Hyphae surround the root cells. (no penetration)
What are Endotrophic Endomycorrhizae? Vs Ecto
Hyphae enter the cortical cells of the root and are enveloped by the plasmaelmma of the host.
What plants have mycorrhizae?
85% of all terrestrial plants.
What do mycorrhizae do?
Increase surface area of plant-soil interface… Increase nutrients… Protects roots from pathogenic fungi… Increase fitness in and between plants via mycorrhizal network.
What is the main example of Arbuscular mycorrhizae that’s endotrophic.
Glomalean (Glomeromycotan)… Huge green ball that has been around for 400+ Mya
Ectomycorrhizal Hymenomycetes…
Cantherellus, Ramaria, Boletus, Tricholoma, Rhizopogon, Amanita, Russula, Suillus, Laccaria, Pisolithus, Cortinarius.
How common is Ectomycorrhizae (ECM) vs Arbuscular (AM, VAM) mycorrhizae?
ECM is about 2000 spp while VAM is 300,000 species.
What are the various Mycorrhizae types?
Ericoid, Arbutoid, Monotropoid, Orchids,
What are Ericoid mycorrhizae defined by?
Low nutrient soil,,, hair roots 2-3 cells thin. Forms coiled structures
What are Arbutoid mycorrhizae defined by?
Can form mycorrhizal connections with many plants at same time.
What are Monotropoid mycorrhizae defined by?
Mycotrophic plants eat the ectomycorrhizal fungi by lysing part of the fungal cell and absorbing it.
What are Homobasidiomycetes? Holobasidia?
Same thing… 8 groups of nonseptate basidia.
What are gasteromycetes? Traits?
Spores mature inside basidiocarp. Not forcibly discharged. (not a formal taxa… traits evolved 4 unique times).
What is a Statismospore?
Spores on sterigmata that are formed symmetrically, and not actively discharged.
What is Gleba?
Fertile portion of Holobasidia that contains basidia and spores.
Define Peridium.
Outer covering of basidiocarp,,, sometimes multilayered.
Define Peridiole.
Small structures containing basidiospores and basidia (at bottom of cup) *think water*
Traits of Scleroderma and Pisolithus (sclerodermatiniae)
Sclero are small earth balls with dark center gleba. ECM.. Spores are spikey, (reticulate)… Pisolithus is dead mans hand.
What are Melanogaster, and Rhizopogon?
Tubers or false truffles. Hypogeous balls
What Gasteromycetes are Agaircales? (stuffed puffballs)
Puffballs and Crucibulum,
What Gasteromycetes are Phallales?
Stinkhorns, earth stars, and Cannon balls.
Gasteromycetes in Russulales? (unimportant)
Balls called Macowanites or Zelleromycetes are 2 examples.
In Rusts and smuts… Where does the dikaryon appear.
In the Teliospore
What does host specificity refer to?
If a fungus is restricted to a specific host or group of hosts… Or can just be lots of places.
What does host range refer to?
The different plant species a fungis is capable of establishing a parasitic relationship with.
What is the structure "appressoria and haustoria"?
App is adhesion.. Haust is nutrient uptake arm that sticks itself inside the plant cell.
What do the terms "autoecious and heteroecious" refer to, in rusts?
auto is life cycle on just 1 host… Hetero has 2 or more hosts.
Phases of wheat rust life cycle?
pycnia monokaryon > Aecia dikaryon > uredinia binucleate > Telia karyogamy makes diploid > basidia meiosis to haploid basidiospores.
In rusts, what does Macro demi or micro cyclic refer to?
Macro is all stages,,, Demi skips Uredinia (3) ,,, Micro skips Uredinia and aecia… (2-3)
In rusts,,, what stages are on aecial (secondary) host?
0 and 1… Pycnia and Aecia
In rusts,,, what stages are on the telial (primary) host?
2-4… Uredinia to Telial to Basidium.
What is Tranzschel's Law
Macrocyclic rust are ancestral… Microcyclic species are derived from Macro but lost stage 1 and 2.
What are stephanocysts and Toxocysts.
Nematode capturing devices and paralytic toxins.
What are exobasidiomycetes and exobasidium? Example?
Skin Malassezia, Cryptococcus neoformans.