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80 Cards in this Set

  • Front
  • Back

Genetics

Study of how hereditary material is transferred

Genome

All genetic material in a cell

Semiconservative replication

Parent strand is divided, the new strands are half new and half old

Transcription

First step, genes to proteins






Transcription steps

1. Rna polymerase binds to promoter and initiates DNA unraveling2. Rna polymerase assembles free ribonucleotides into chains of rna3. Rna polymerase moves down the gene adding to the rna chain that exists as a single strand4. Rna synthesis continues until rna polymerase hits a terminator5. Rho termination facilitates rna strand dissociation from the dna

Translation

Rna to protein, second step

mRNA

Messenger rna

Codon

Groups of 3 bases, specific to an amino acid

Degeneracy

Process of having multiple codons for each amino acid

Charged tRNA

Transfer rna with an amino acid attached

Ribosome binding site

Site where 16S rna binds to ribosome for translation

Peptidyl transferase

Catalyzes the formation of a peptide bond between the amino acids

Initiation

Ribosome subunits come together around mRNA

Elongation

Amino acids are added to the growing polypeptide chain

Termination

Ribosome-mRNA complex disassembles and releases protein

Genotype

Genetic makeup of an organism

Phenotype

Observable traits an organism has

Mutation

Change in the genetic makeup

Missense mutation

When a change in one nucleotide results in a change of 1 amino acid

Nonsense mutations

Occurs when base change results in a nonsense codon which stops protein synthesis

Frameshift mutation

Occurs when one nucleotide is either added or subtracted

Horizontal gene transfer

Bacteria swapping genetic material between individuals independent from reproduction

Vertical gene transfer

Gene transfer from parent to offspring

Mechanisms of horizontal gene transfer

Transformation, conjugation, transduction

Griffiths experiment

1920s, was the first to demonstrate transformation

Conjugation

Ability to transfer a copy of some of its genome directly to another bacteria

Plasmids

Small, self replicating circular pieces of extra-chromosomal DNA

Hyperthermophiles

Extremely hot temperatures

Thermophiles

Hot temperature

Mesophiles

Most pathogens, flora, human temp

Psychotrophs

Mostly cold, storage temp

Psychrophiles

Really, really cold

Acidophiles

Tolerate low pH

Obligate halophiles

Require high salt to live

Facultative halophiles

Do not require high salt but can survive in them, 2%

Chemical requirements

Carbon, hydrogen, nitrogen, sulfur, phosphorus

Superoxide dismutase

Solves the problem of superoxide radicals, creates peroxide

Catalase

-2H2O2 - - > 2H2O + O2


Deals with peroxide

Culture media

Allows the growth of organisms in a lab

Inoculation

Introduce media to a medium

Inoculum

The bacteria that is being transferred

Culture

Refers to the bacteria after is starts growing

Complex media

We do not know everything that's in it or how much

Agar

Common solid media

Reduced media

Media which has no oxygen

Incubator

Oven like creations that maintain temperature, CO2, hydrogen and moisture levels

Anaerobic jar

Small vessels which we can add CO2


to remove oxygen

Pure culture

To study one bacteria at a time, selective, differential and enrichment

Selective media

Encourages growth of target organism

Differential media

Allows one microbe to be differentiated from others

Enrichment media

Helps grow target organism

Lag phase

First inoculation, gearing up for rapid growth

Log phase

Cells are actively dividing in exponential format

Stationary phase

Nutrients run out, waste builds up, pH change, cells die and growth becomes 0

Death phase

Nutrients decrease, toxicity increases, death overtakes growth

Pour plating

Where a sample is combined with molten agar and poured into a plate

Spread plating

Sample of bacteria are spead over the top of a solidified agar

Snap freezing

Culture is combined with antifreeze and rapidly frozen and maintained at extremely low temperatures

Lyophilization

Freeze drying, no cryoprotectant, vacuum is applied, can be stored at room temp for centuries

EPS

Slimy layer of DNA, proteins, and polysaccharides that provides protection

Biofilms

Complex microbial communities

Obligatory intracellular parasite

Absolutely require living host cells in order to multiply

Capsid

Made up of capsomeres, for protection

Viral envelope

Stolen nuclear membrane wrapped around virus

Spike protein

Protrusion that tells the virus what to infect

Bacteriophage

Bacterial viruses that have complex structures

Host range

What organisms a virus can infect

Tissue tropism

Select infection of a few cells or tissues

Lytic

Ends with lysis and death of host cell

Lysogenic

Host cell can remain alive if the virus incorporates its DNA as a prohage into the DNA of the host

Plaque

The area of lysis

Bacteriophage therapy

Deliberate application of phages to kill bacteria in infected tissue to attack viruses

Restriction enzyme

Protein that recognizes a specific nucleotide and cuts the DNA there

Cytopathic effects

Visible changes in the host cell of a virus

Cancer

Unregulated cellular division

Oncogene

Gene who's product is involved in the transforming of cells, controls division

Oncogenic virus

Virus that has the oncogene in its DNA and spreads it

Acute infection

Get sick, get better

Latent infection

Infection that causes symptoms, hides in DNA, re-emerges when the immune response stops, in a cyclee

Persistent infection

Infection that over long period of time, keeps coming back, it's a build up of virus that wears out the immune system