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30 Cards in this Set

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The sum of all the chemical processes carried outby living organisms
Metabolism
reactions that release energy bybreaking complex molecules into simplerones that can be reused as building blocks

 XY  X + Y + energy


 exergonic reaction

Catabolism
chemical reactions that result inbuilding new molecules from simpler substances

 requires energy (ATP)


 X + Y + energy  XY


 endergonic reaction


 needed for growth, repair, reproduction, movement,transport etc.


 where does the energy come from?

Anabolism
Loss of electrons and hydrogen atoms
Oxidation Reaction
Gain of electrons and hydrogen atoms
Reduction Reaction

obtains energy from light

Phototroph
obtains energy by oxidizing simple inorganic substances such as sulfides and nitrites (energy source = inorganic compounds)
Chemotroph
Nutritionally deficient mutant that has lost the ability to synthesize a particular enzyme (making of own food by reducing CO2)
Autotroph
An organism that uses compounds to produce biomolecules (using ready made organic molecules for food)
Heterotroph
proteins that catalyze chemical reactions
Enzyme
(1) The substance on which an enzyme acts.

(2) A surface or food source on which a cell can grow or a spore can germinate

Substrate
an inorganic ion necessary for function of the enzyme

 improves the fit of an enzyme with itssubstrate


 often a metal ion

Cofactor
An organic molecule bound to or loosely associated with an enzyme
Coenzyme
 Compare/contrast anabolism and catabolismo Which requires energy? Which releases energy?

o What are the uses of each type of reaction?

Anabolism:- requires energy

- x + y + energy -> xy


- endergonic reaction


- needed for growth, repair, reproduction, movement, transport




Catabolism:- releases energy


- xy -> x + y + energy


- exergonic reaction


- catabolic reactions involve electron transfer

 What electron carrier molecules are used in metabolism?

o Recognize oxidized and reduced states

NAD: nicotinamide adenine dinucleotide AND FAD: flavin adenine dinucleotide




Both carriers cyclebetween oxidizedstates: NAD+,FADH and


reduced states:NADH, FADH2

 How does the structure of ATP allow it to hold so much energy?

o How is ATP used?


o How is it made?

-It has 3 phosphate groups




-ATPADP + Pi + energy


reaction is reversible ifenergy is inputted into thereaction




-It is made via Phosphorylation: the reaction in which Piis added toADP

List and recognize the three types of phosphorylation
1. Substrate Level Phosphorylation:compound-P + ADP  compound + ATP



2. Oxidative Phosphorylation:NADH or FADH2 ETC ATP




3. Photosphosphorylation:ATP is formed through a series of light drivenreactions

How do enzymes work?

Catalyze chemical reactions
Structure of an enzyme
Protein = apoenzyme; contains the active site which binds substrate

Non-protein = cofactor/coenzyme

Function of the cofactor

Improves the fit of an enzyme with its substrate; often a metal ion

Function of the coenzyme

Many are synthesized vitamins; niacin is used to make NAD
What factors regulate enzyme activity?
- Temperature, concentration of substrates and products

- pH (small pH changes can alter charges on chemical groups within the enzyme, which may alter an enzymes ability to bind substrate, keep its secondary or tertiary structure)


- Enzymatic reactions are subject to chemical equilibrium; an enzyme can only perform so many reactions per second

 A molecule similar in structure to a substrate can bind toan enzyme’s active site

 competes with substrate for the active site (e.g. sulfadrugs prevent bacteria from converting PABA to folicacid)


 results in enzyme activity slowed or stopped

Competitive Inhibition







 attach to the enzyme at an allosteric site (a site otherthan the active site)

 noncompetitive inhibitors distort the tertiary proteinstructure and alter the shape of the active site

Noncompetitive inhibition

Three types of bacterial metabolism


ESSAY

(3 ways to extract energy (make ATP) from glucose:

1. Gycolysis


2. Fermentation


3. Respiration (glycolysis, krebs cycle, electron transport chain)

Glycolysis:

o How many net ATP are produced?


o What are the products?


o Where does this occur in prokaryotes? In eukaryotes?

The metabolic pathway to begin breakdown of glucose

- 2 ATP are produced


- Products are 2 pyruvate, 2 NADH,


ATP


- glycolysis occurs in the cytosol

 Fermentation:

o Two major types of fermentation?


o Which organisms use each type?


o What is the purpose of fermentation?


o What are the products of each type of fermentation?

-One process by which pyruvate is metabolized in theabsence of oxygen



- Homolactic acid fermentation: pyruvate is converteddirectly to lactic acid


 Alcoholic fermentation: carbon dioxide is releasedfrom pyruvate and reduced to ethanol (common in yeast)




-Fermentation purpose: Results from the need to recycle the limited amount of NAD passing the electrons of reduced NAD to other molecules




-product of homolactic acid fermentation: Lactic acid


product of alcoholic fermentation: ethyl alcohol and CO2





 Aerobic Respiration:

o Three phases of aerobic respiration


 Location of each phase in prokaryotes and eukaryotes


 Products of each phase

Aerobic respiration- oxygen is terminal electron acceptor; begins with glycolysis, end product is 3 carbon pyruvate



-


1. Glycolysis


2. The Krebs Cycle


3. Electron Transport Chain




-Prokaryotes: in cytoplasm


Eukaryotes: Mitochondria in cytoplasm




-Glycolyis = pyruvic acid


Krebs Cycle = CO2, NADH, FADH2, ATP


Electron Transport Chain = ATP

o What is the total amount of ATP produced from 1 glucose molecule thatcompletes aerobic respiration?

2

o Understand chemiosmosis

 How does it power ATP formation?


 Which enzyme helps to make ATP?

Electron transport through the chain creates the hydrogen concentration gradient across the cell membrane

- hydrogens increase in concentration on outside of membrane


- creates a hydrogen concentration gradient called the proton motive force




-ATP is produced by proton motive force by allowing Hydrogen ion to cross the membrane




-ATP Synthase